Johns Hopkins low-grade meningioma spatial atlas
19 low-grade (WHO I/II) meningiomas profiled with full-transcriptome Visium spatial transcriptomics, cross-classified into the Choudhury/Raleigh methylation groups (Merlin-intact/immune-enriched/hypermitotic). No linked publication as of this session, likely an in-progress or very recently released dataset from the Fan Lab (computational spatial transcriptomics methods group).
Overview
- Modality
- Spatial transcriptomics
- Sample count
- 19
- Patient count
- Not reported
- Institution
- Johns Hopkins
- Corresponding author
- Lyla Atta, Jean Fan
- Platform
- 10x Genomics Visium
- Access type
- open
- Tissue preservation
- Not reported
- WHO edition
- Not reported
Cohort detail
- Grade breakdown
- Not reported
- Sex distribution
- Not reported
- Age distribution
- Not reported
- Anatomic location
- Not reported
- Brain invasion
- Not reported
- Normal/control tissue
- None
Interactive gene-expression viewer
All 19 samples, each spot plotted at its true tissue position, side by side · 48,388 cells, 100 genes, 19 samples merged.
Spots are plotted at true tissue position per sample, not merged into one shared coordinate space -- the 19 samples are independent tissue sections side by side, not directly overlaid.
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Priority attributes
Spatial resolutionMolecular subtype annotated
Publications
No publication linked.
Sources
- GEOhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299027